PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_59277.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family SRS
Protein Properties Length: 302aa    MW: 31405.7 Da    PI: 8.6512
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_59277.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702209.77.3e-65902434154
        DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel..kskkqsalsstklssaeskk 98 
                   g+++C+dCGnqakkdC h+RCRtCCksrgfdC+thv+stW+paa+rre+q     +s  a    a+a++k++r +  ++++++++s+t++s+++s++
  MLOC_59277.1  90 GSTTCNDCGNQAKKDCPHQRCRTCCKSRGFDCTTHVRSTWIPAARRREKQPLGGDLSPPAPP--ATATTKKPRLHssQTTTTTTTSRTSTSNGTSSS 184
                   7789********************************************99888887666655..455555555551155555555666666665554 PP

        DUF702  99 eletss.....lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                   + +        lP++v+++avfrcvrv+svddg +e+aYq+avsi+Gh+f+G+LydqG+++
  MLOC_59277.1 185 QQD--ApfkdsLPRHVRAPAVFRCVRVTSVDDGADEFAYQAAVSINGHMFRGFLYDQGAHD 243
                   444..233556***********************************************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.0E-5891242IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016232.7E-2693135IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.4E-24194240IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MVVLTPTASF HHQRAASAAA AADGADPGFA LLSAEQCGLA GPGAPKSGSA IQFWQSHSQP  60
TTPPPAAQAD KKQLASAVDY GGGVSSGSGG STTCNDCGNQ AKKDCPHQRC RTCCKSRGFD  120
CTTHVRSTWI PAARRREKQP LGGDLSPPAP PATATTKKPR LHSSQTTTTT TTSRTSTSNG  180
TSSSQQDAPF KDSLPRHVRA PAVFRCVRVT SVDDGADEFA YQAAVSINGH MFRGFLYDQG  240
AHDGRASNDE PSHAHAAAVR SISDLHLGNA NASAVPPDMY NTVSGALILG GLGYGKHFTS  300
VY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3745320.0AK374532.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3068E07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638614.12e-90PREDICTED: protein LATERAL ROOT PRIMORDIUM 1
SwissprotQ94CK95e-53LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBLM0XE260.0M0XE26_HORVD; Uncharacterized protein
STRINGMLOC_59277.50.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.22e-42Lateral root primordium (LRP) protein-related